J3_7DUI_010
3D structure
- PDB id
- 7DUI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUI_010 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.113
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7DUI|1|A|U|1073
7DUI|1|A|G|1074
*
7DUI|1|A|U|1083
7DUI|1|A|G|1084
7DUI|1|A|U|1085
7DUI|1|A|U|1086
7DUI|1|A|G|1087
*
7DUI|1|A|C|1098
7DUI|1|A|G|1099
7DUI|1|A|C|1100
7DUI|1|A|A|1101
7DUI|1|A|A|1102
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
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