J3_7DUJ_005
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUJ_005 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0711
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
7DUJ|1|A|C|936
7DUJ|1|A|A|937
7DUJ|1|A|A|938
7DUJ|1|A|G|939
*
7DUJ|1|A|C|1344
7DUJ|1|A|U|1345
7DUJ|1|A|A|1346
7DUJ|1|A|G|1347
7DUJ|1|A|U|1348
7DUJ|1|A|A|1349
7DUJ|1|A|A|1350
*
7DUJ|1|A|U|1372
7DUJ|1|A|G|1373
7DUJ|1|A|A|1374
7DUJ|1|A|A|1375
7DUJ|1|A|U|1376
7DUJ|1|A|A|1377
7DUJ|1|A|C|1378
7DUJ|1|A|G|1379
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: