J3_7DUK_010
3D structure
- PDB id
- 7DUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 7DUK|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUK_010 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1173
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7DUK|1|A|C|1116
7DUK|1|A|G|1117
7DUK|1|A|C|1118
*
7DUK|1|A|G|1155
7DUK|1|A|G|1156
7DUK|1|A|A|1157
7DUK|1|A|C|1158
7DUK|1|A|U|1159
7DUK|1|A|G|1160
7DUK|1|A|C|1161
*
7DUK|1|A|G|1175
7DUK|1|A|A|1176
7DUK|1|A|G|1177
7DUK|1|A|G|1178
7DUK|1|A|A|1179
7DUK|1|A|A|1180
7DUK|1|A|G|1181
7DUK|1|A|G|1182
7DUK|1|A|A|1183
7DUK|1|A|G|1184
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S14 type Z
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