J3_7DUK_011

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7DUK|1|A|U|1240, 7DUK|1|A|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7DUK_011 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1031

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7DUK|1|A|C|1237
7DUK|1|A|A|1238
7DUK|1|A|A|1239
7DUK|1|A|U|1240
7DUK|1|A|G|1241
*
7DUK|1|A|C|1296
7DUK|1|A|C|1297
7DUK|1|A|C|1298
7DUK|1|A|A|1299
7DUK|1|A|G|1300
7DUK|1|A|U|1301
7DUK|1|A|U|1302
7DUK|1|A|C|1303
*
7DUK|1|A|G|1334
7DUK|1|A|C|1335
7DUK|1|A|C|1336
7DUK|1|A|G|1337

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain M

30S ribosomal protein S13

Chain U

30S ribosomal protein Thx