J3_7DUL_011

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7DUL|1|A|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7DUL_011 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1054

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7DUL|1|A|C|1237
7DUL|1|A|A|1238
7DUL|1|A|A|1239
7DUL|1|A|U|1240
7DUL|1|A|G|1241
*
7DUL|1|A|C|1296
7DUL|1|A|C|1297
7DUL|1|A|C|1298
7DUL|1|A|A|1299
7DUL|1|A|G|1300
7DUL|1|A|U|1301
7DUL|1|A|U|1302
7DUL|1|A|C|1303
*
7DUL|1|A|G|1334
7DUL|1|A|C|1335
7DUL|1|A|C|1336
7DUL|1|A|G|1337

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain M

30S ribosomal protein S13

Chain U

30S ribosomal protein Thx