J3_7F0D_003

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

7F0D|1|A|U|815, 7F0D|1|A|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1041

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7F0D|1|A|U|812
7F0D|1|A|G|813
7F0D|1|A|A|814
7F0D|1|A|U|815
7F0D|1|A|C|816
7F0D|1|A|U|817
7F0D|1|A|A|818
*
7F0D|1|A|U|902
7F0D|1|A|A|903
7F0D|1|A|G|904
*
7F0D|1|A|C|920
7F0D|1|A|A|921
7F0D|1|A|A|922
7F0D|1|A|A|923

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2