J3_7F0D_005

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_005 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.2104

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|C|1429
7F0D|1|A|G|1430
7F0D|1|A|A|1431
7F0D|1|A|A|1432
7F0D|1|A|A|1433
7F0D|1|A|G|1434
*
7F0D|1|A|C|1860
7F0D|1|A|A|1861
7F0D|1|A|G|1862
*
7F0D|1|A|C|1874
7F0D|1|A|A|1875
7F0D|1|A|A|1876
7F0D|1|A|G|1877

Current chains

Chain A

23S rRNA

Nearby chains