J3_7F0D_009

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_009 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2605

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|U|1663
7F0D|1|A|G|1664
7F0D|1|A|A|1665
7F0D|1|A|C|1666
7F0D|1|A|G|1667
*
7F0D|1|A|C|1801
7F0D|1|A|C|1802
*
7F0D|1|A|G|1805
7F0D|1|A|A|1806
7F0D|1|A|A|1807
7F0D|1|A|A|1808
7F0D|1|A|A|1809
7F0D|1|A|G|1810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2