J3_7F0D_011

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAA*UGGCGAG*CACAAG

Length

18 nucleotides

Bulged bases

7F0D|1|A|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F0D|1|A|C|2533
7F0D|1|A|U|2534
7F0D|1|A|C|2535
7F0D|1|A|A|2536
7F0D|1|A|A|2537
*
7F0D|1|A|U|2555
7F0D|1|A|G|2556
7F0D|1|A|G|2557
7F0D|1|A|C|2558
7F0D|1|A|G|2559
7F0D|1|A|A|2560
7F0D|1|A|G|2561
*
7F0D|1|A|C|2570
7F0D|1|A|A|2571
7F0D|1|A|C|2572
7F0D|1|A|A|2573
7F0D|1|A|A|2574
7F0D|1|A|G|2575

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27