3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
(OMG)UC*GCCU(5MC)ACGAUCC*(OMG)GUGUC
Length
21 nucleotides
Bulged bases
7F5S|1|L5|C|4337, 7F5S|1|L5|U|4374
QA status
Modified nucleotides: OMG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7F5S_024 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0854
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

7F5S|1|L5|OMG|4228
7F5S|1|L5|U|4229
7F5S|1|L5|C|4230
*
7F5S|1|L5|G|4331
7F5S|1|L5|C|4332
7F5S|1|L5|C|4333
7F5S|1|L5|U|4334
7F5S|1|L5|5MC|4335
7F5S|1|L5|A|4336
7F5S|1|L5|C|4337
7F5S|1|L5|G|4338
7F5S|1|L5|A|4339
7F5S|1|L5|U|4340
7F5S|1|L5|C|4341
7F5S|1|L5|C|4342
*
7F5S|1|L5|OMG|4370
7F5S|1|L5|G|4371
7F5S|1|L5|U|4372
7F5S|1|L5|G|4373
7F5S|1|L5|U|4374
7F5S|1|L5|C|4375

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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