J3_7F5S_026

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7F5S|1|L5|U|4882, 7F5S|1|L5|A|4938, 7F5S|1|L5|C|4940, 7F5S|1|L5|A|4943, 7F5S|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F5S|1|L5|G|4751
7F5S|1|L5|U|4752
7F5S|1|L5|U|4753
7F5S|1|L5|G|4754
*
7F5S|1|L5|C|4879
7F5S|1|L5|C|4880
7F5S|1|L5|U|4881
7F5S|1|L5|U|4882
7F5S|1|L5|C|4883
*
7F5S|1|L5|G|4936
7F5S|1|L5|C|4937
7F5S|1|L5|A|4938
7F5S|1|L5|C|4939
7F5S|1|L5|C|4940
7F5S|1|L5|G|4941
7F5S|1|L5|C|4942
7F5S|1|L5|A|4943
7F5S|1|L5|C|4944
7F5S|1|L5|G|4945
7F5S|1|L5|U|4946
7F5S|1|L5|U|4947
7F5S|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a