J3_7JQB_015

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

7JQB|1|A|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQB|1|A|U|682
7JQB|1|A|G|683
7JQB|1|A|G|684
7JQB|1|A|A|685
*
7JQB|1|A|U|917
7JQB|1|A|U|918
7JQB|1|A|A|919
7JQB|1|A|A|920
7JQB|1|A|G|921
7JQB|1|A|A|922
7JQB|1|A|G|923
*
7JQB|1|A|C|1019
7JQB|1|A|A|1020
7JQB|1|A|U|1021
7JQB|1|A|U|1022
7JQB|1|A|A|1023

Current chains

Chain A

rRNA

Nearby chains

Chain I

eS7

Chain O

uS17

Chain P

uS15

Chain Y

uS8

Chain c

Uncharacterized protein

Chain e

eS27