J3_7JQC_005

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7JQC|1|A|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|C|1094
7JQC|1|A|C|1095
7JQC|1|A|G|1096
*
7JQC|1|A|U|1136
7JQC|1|A|U|1137
7JQC|1|A|C|1138
7JQC|1|A|C|1139
7JQC|1|A|G|1140
*
7JQC|1|A|C|1147
7JQC|1|A|A|1148
7JQC|1|A|A|1149
7JQC|1|A|A|1150
7JQC|1|A|G|1151

Current chains

Chain A

rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain W

40S ribosomal protein S21

Chain Y

uS8

Chain b

40S ribosomal protein S26

Chain e

eS27