J3_7JQL_012

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7JQL|1|1A|A|2518, 7JQL|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQL_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0621

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7JQL|1|1A|C|2517
7JQL|1|1A|A|2518
7JQL|1|1A|U|2519
7JQL|1|1A|C|2520
*
7JQL|1|1A|G|2545
7JQL|1|1A|U|2546
7JQL|1|1A|U|2547
*
7JQL|1|1A|A|2561
7JQL|1|1A|U|2562
7JQL|1|1A|U|2563
7JQL|1|1A|A|2564
7JQL|1|1A|A|2565
7JQL|1|1A|A|2566
7JQL|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14