J3_7JQM_051

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQM_051 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1268

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7JQM|1|2a|U|1073
7JQM|1|2a|G|1074
*
7JQM|1|2a|U|1083
7JQM|1|2a|G|1084
7JQM|1|2a|U|1085
7JQM|1|2a|U|1086
7JQM|1|2a|G|1087
*
7JQM|1|2a|C|1098
7JQM|1|2a|G|1099
7JQM|1|2a|C|1100
7JQM|1|2a|A|1101
7JQM|1|2a|A|1102

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5