J3_7JSS_003

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7JSS|1|1|U|686, 7JSS|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSS_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3313

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|U|683
7JSS|1|1|G|684
7JSS|1|1|A|685
7JSS|1|1|U|686
7JSS|1|1|C|687
7JSS|1|1|U|688
7JSS|1|1|A|689
*
7JSS|1|1|U|773
7JSS|1|1|G|774
7JSS|1|1|G|775
*
7JSS|1|1|C|791
7JSS|1|1|A|792
7JSS|1|1|A|793
7JSS|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2