3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
7JSS|1|1|A|2518, 7JSS|1|1|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JSS_011 not in the Motif Atlas
Homologous match to J3_4WF9_009
Geometric discrepancy: 0.158
The information below is about J3_4WF9_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

7JSS|1|1|C|2517
7JSS|1|1|A|2518
7JSS|1|1|U|2519
7JSS|1|1|C|2520
*
7JSS|1|1|G|2545
7JSS|1|1|U|2546
7JSS|1|1|A|2547
*
7JSS|1|1|U|2561
7JSS|1|1|U|2562
7JSS|1|1|U|2563
7JSS|1|1|A|2564
7JSS|1|1|A|2565
7JSS|1|1|A|2566
7JSS|1|1|G|2567

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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