J3_7JSS_018
3D structure
- PDB id
- 7JSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JSS_018 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.2216
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
7JSS|1|3|C|936
7JSS|1|3|A|937
7JSS|1|3|A|938
7JSS|1|3|G|939
*
7JSS|1|3|C|1344
7JSS|1|3|U|1345
7JSS|1|3|A|1346
7JSS|1|3|G|1347
7JSS|1|3|U|1348
7JSS|1|3|A|1349
7JSS|1|3|A|1350
*
7JSS|1|3|U|1372
7JSS|1|3|G|1373
7JSS|1|3|A|1374
7JSS|1|3|A|1375
7JSS|1|3|U|1376
7JSS|1|3|A|1377
7JSS|1|3|C|1378
7JSS|1|3|G|1379
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
Coloring options: