3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
7JSS|1|1|U|34, 7JSS|1|1|U|448, 7JSS|1|1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JSS_027 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1282
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7JSS|1|1|C|32
7JSS|1|1|C|33
7JSS|1|1|U|34
7JSS|1|1|G|35
*
7JSS|1|1|C|445
7JSS|1|1|G|446
7JSS|1|1|A|447
7JSS|1|1|U|448
7JSS|1|1|A|449
7JSS|1|1|G|450
7JSS|1|1|U|451
7JSS|1|1|G|452
7JSS|1|1|A|453
7JSS|1|1|A|454
7JSS|1|1|C|455
7JSS|1|1|C|456
7JSS|1|1|A|457
7JSS|1|1|G|458
7JSS|1|1|U|459
7JSS|1|1|A|460
7JSS|1|1|C|461
*
7JSS|1|1|G|468
7JSS|1|1|G|469
7JSS|1|1|A|470
7JSS|1|1|A|471
7JSS|1|1|A|472
7JSS|1|1|G|473

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain d
50S ribosomal protein L4
Chain q
50S ribosomal protein L20
Chain t
50S ribosomal protein L23

Coloring options:


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