J3_7JSW_003

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7JSW|1|1|U|686, 7JSW|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSW_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1283

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|U|683
7JSW|1|1|G|684
7JSW|1|1|A|685
7JSW|1|1|U|686
7JSW|1|1|C|687
7JSW|1|1|U|688
7JSW|1|1|A|689
*
7JSW|1|1|U|773
7JSW|1|1|G|774
7JSW|1|1|G|775
*
7JSW|1|1|C|791
7JSW|1|1|A|792
7JSW|1|1|A|793
7JSW|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain d

50S ribosomal protein L4