3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGGUU*AGCUUGA*UGACG
Length
17 nucleotides
Bulged bases
7JSW|1|3|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JSW_035 not in the Motif Atlas
Homologous match to J3_6CZR_060
Geometric discrepancy: 0.2694
The information below is about J3_6CZR_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_72319.1
Basepair signature
cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F
Number of instances in this motif group
1

Unit IDs

7JSW|1|3|C|586
7JSW|1|3|G|587
7JSW|1|3|G|588
7JSW|1|3|U|589
7JSW|1|3|U|590
*
7JSW|1|3|A|649
7JSW|1|3|G|650
7JSW|1|3|C|651
7JSW|1|3|U|652
7JSW|1|3|U|653
7JSW|1|3|G|654
7JSW|1|3|A|655
*
7JSW|1|3|U|751
7JSW|1|3|G|752
7JSW|1|3|A|753
7JSW|1|3|C|754
7JSW|1|3|G|755

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain M
30S ribosomal protein S8
Chain Q
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17

Coloring options:


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