J3_7JSZ_003

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7JSZ|1|1|U|686, 7JSZ|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSZ_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3379

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSZ|1|1|U|683
7JSZ|1|1|G|684
7JSZ|1|1|A|685
7JSZ|1|1|U|686
7JSZ|1|1|C|687
7JSZ|1|1|U|688
7JSZ|1|1|A|689
*
7JSZ|1|1|U|773
7JSZ|1|1|G|774
7JSZ|1|1|G|775
*
7JSZ|1|1|C|791
7JSZ|1|1|A|792
7JSZ|1|1|A|793
7JSZ|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain d

50S ribosomal protein L4