J3_7JT1_017
3D structure
- PDB id
- 7JT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 7JT1|1|3|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JT1_017 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.125
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7JT1|1|3|U|672
7JT1|1|3|A|673
*
7JT1|1|3|U|717
7JT1|1|3|A|718
7JT1|1|3|C|719
7JT1|1|3|C|720
7JT1|1|3|G|721
7JT1|1|3|G|722
7JT1|1|3|U|723
7JT1|1|3|G|724
7JT1|1|3|G|725
*
7JT1|1|3|C|732
7JT1|1|3|G|733
7JT1|1|3|G|734
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S6
- Chain P
- 30S ribosomal protein S11
- Chain T
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
- Chain b
- 50S ribosomal protein L2
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