J3_7JT2_001

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT2_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1035

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|G|30
7JT2|1|1|C|31
*
7JT2|1|1|G|474
7JT2|1|1|C|475
7JT2|1|1|G|476
7JT2|1|1|A|477
7JT2|1|1|A|478
7JT2|1|1|A|479
7JT2|1|1|A|480
7JT2|1|1|G|481
*
7JT2|1|1|C|509
7JT2|1|1|C|510

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24