J3_7JT2_005

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT2_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2485

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|G|1055
7JT2|1|1|G|1056
7JT2|1|1|A|1057
*
7JT2|1|1|U|1081
7JT2|1|1|U|1082
7JT2|1|1|U|1083
7JT2|1|1|A|1084
7JT2|1|1|A|1085
7JT2|1|1|A|1086
7JT2|1|1|G|1087
*
7JT2|1|1|C|1102
7JT2|1|1|A|1103
7JT2|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain h

50S ribosomal protein L10