3D structure

PDB id
7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome stalled on long mRNA with ArfB bound in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7JT2|1|3|A|958, 7JT2|1|3|A|975, 7JT2|1|3|G|976, 7JT2|1|3|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JT2_021 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0998
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7JT2|1|3|U|955
7JT2|1|3|U|956
7JT2|1|3|U|957
7JT2|1|3|A|958
7JT2|1|3|A|959
7JT2|1|3|U|960
7JT2|1|3|U|961
7JT2|1|3|C|962
*
7JT2|1|3|G|973
7JT2|1|3|A|974
7JT2|1|3|A|975
7JT2|1|3|G|976
7JT2|1|3|A|977
7JT2|1|3|A|978
7JT2|1|3|C|979
7JT2|1|3|C|980
7JT2|1|3|U|981
7JT2|1|3|U|982
7JT2|1|3|A|983
7JT2|1|3|C|984
*
7JT2|1|3|G|1221
7JT2|1|3|G|1222
7JT2|1|3|C|1223
7JT2|1|3|U|1224
7JT2|1|3|A|1225

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14
Chain X
30S ribosomal protein S19

Coloring options:


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