3D structure

PDB id
7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome stalled on long mRNA with ArfB bound in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
7JT2|1|3|U|1240, 7JT2|1|3|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JT2_026 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.2805
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7JT2|1|3|C|1237
7JT2|1|3|A|1238
7JT2|1|3|A|1239
7JT2|1|3|U|1240
7JT2|1|3|G|1241
*
7JT2|1|3|C|1296
7JT2|1|3|G|1297
7JT2|1|3|U|1298
7JT2|1|3|A|1299
7JT2|1|3|G|1300
7JT2|1|3|U|1301
7JT2|1|3|C|1302
7JT2|1|3|C|1303
*
7JT2|1|3|G|1334
7JT2|1|3|U|1335
7JT2|1|3|C|1336
7JT2|1|3|G|1337

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S7
Chain R
30S ribosomal protein S13

Coloring options:


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