3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
7JT3|1|1|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JT3_011 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.1727
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

7JT3|1|1|C|2517
7JT3|1|1|A|2518
7JT3|1|1|U|2519
7JT3|1|1|C|2520
*
7JT3|1|1|G|2545
7JT3|1|1|U|2546
7JT3|1|1|A|2547
*
7JT3|1|1|U|2561
7JT3|1|1|U|2562
7JT3|1|1|U|2563
7JT3|1|1|A|2564
7JT3|1|1|A|2565
7JT3|1|1|A|2566
7JT3|1|1|G|2567

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain k
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6344 s
Application loaded.