J3_7JT3_038

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7JT3|1|1|U|321, 7JT3|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT3_038 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1686

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JT3|1|1|G|297
7JT3|1|1|G|298
7JT3|1|1|A|299
7JT3|1|1|A|300
7JT3|1|1|G|301
*
7JT3|1|1|C|316
7JT3|1|1|G|317
7JT3|1|1|C|318
7JT3|1|1|G|319
7JT3|1|1|A|320
7JT3|1|1|U|321
7JT3|1|1|A|322
7JT3|1|1|C|323
7JT3|1|1|A|324
7JT3|1|1|G|325
*
7JT3|1|1|C|337
7JT3|1|1|G|338
7JT3|1|1|U|339
7JT3|1|1|A|340
7JT3|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24