3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7K00|1|a|A|504, 7K00|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K00_032 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.061
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7K00|1|a|G|30
7K00|1|a|C|31
*
7K00|1|a|G|474
7K00|1|a|C|475
7K00|1|a|G|476
7K00|1|a|A|477
7K00|1|a|A|478
7K00|1|a|A|479
7K00|1|a|A|480
7K00|1|a|G|481
7K00|1|a|A|482
7K00|1|a|A|483
7K00|1|a|C|484
*
7K00|1|a|G|496
7K00|1|a|A|497
7K00|1|a|G|498
7K00|1|a|U|499
7K00|1|a|G|500
7K00|1|a|A|501
7K00|1|a|A|502
7K00|1|a|A|503
7K00|1|a|A|504
7K00|1|a|A|505
7K00|1|a|G|506
7K00|1|a|A|507
7K00|1|a|A|508
7K00|1|a|C|509
7K00|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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