J3_7K50_004

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K50_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0817

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7K50|1|1|C|698
7K50|1|1|A|699
7K50|1|1|G|700
*
7K50|1|1|C|732
7K50|1|1|G|733
7K50|1|1|A|734
7K50|1|1|A|735
7K50|1|1|C|736
*
7K50|1|1|G|760
7K50|1|1|A|761
7K50|1|1|U|762
7K50|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2