J3_7K5I_010

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K5I_010 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1372

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7K5I|1|2|U|1350
7K5I|1|2|G|1351
*
7K5I|1|2|U|1360
7K5I|1|2|G|1361
7K5I|1|2|U|1362
7K5I|1|2|C|1363
*
7K5I|1|2|G|1375
7K5I|1|2|A|1376
7K5I|1|2|U|1377
7K5I|1|2|A|1378
7K5I|1|2|A|1379

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17