J3_7K5I_013

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7K5I|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K5I_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0731

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7K5I|1|2|A|40
7K5I|1|2|G|41
7K5I|1|2|A|42
7K5I|1|2|U|43
7K5I|1|2|U|44
7K5I|1|2|A|45
7K5I|1|2|A|46
7K5I|1|2|G|47
*
7K5I|1|2|C|479
7K5I|1|2|G|480
7K5I|1|2|C|481
7K5I|1|2|G|482
7K5I|1|2|C|483
7K5I|1|2|A|484
7K5I|1|2|A|485
7K5I|1|2|A|486
7K5I|1|2|U|487
*
7K5I|1|2|A|512
7K5I|1|2|G|513
7K5I|1|2|U|514

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23