J3_7KD1_001

3D structure

PDB id

7KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo structure of the THF riboswitch aptamer domain

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

UUAAGUGU*AACGAAG*CG

Length

17 nucleotides

Bulged bases

7KD1|1|A|U|21||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7KD1_001 not in the Motif Atlas

Homologous match to J3_3SUX_001

Geometric discrepancy: 0.2277

The information below is about J3_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53439.1

Basepair signature

cWW-tSS-F-cWW-tHW-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7KD1|1|A|U|20
7KD1|1|A|U|21||A
7KD1|1|A|A|22
7KD1|1|A|A|23
7KD1|1|A|G|24
7KD1|1|A|U|25
7KD1|1|A|G|26
7KD1|1|A|U|27
*
7KD1|1|A|A|51
7KD1|1|A|A|52
7KD1|1|A|C|53
7KD1|1|A|G|54
7KD1|1|A|A|55
7KD1|1|A|A|56
7KD1|1|A|G|57
*
7KD1|1|A|C|64
7KD1|1|A|G|65

Current chains

Chain A

tetrahydrofolate riboswitch aptamer domain

Nearby chains