J3_7KGB_011

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7KGB_011 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.101

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7KGB|1|A|U|2328
7KGB|1|A|U|2329
7KGB|1|A|G|2330
*
7KGB|1|A|C|2433
7KGB|1|A|U|2434
7KGB|1|A|A|2435
7KGB|1|A|A|2436
7KGB|1|A|C|2437
*
7KGB|1|A|G|2461
7KGB|1|A|G|2462
7KGB|1|A|A|2463
7KGB|1|A|C|2464
7KGB|1|A|A|2465
7KGB|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28