J3_7KGB_020
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_020 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0636
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
7KGB|1|a|C|929
7KGB|1|a|A|930
7KGB|1|a|A|931
7KGB|1|a|G|932
*
7KGB|1|a|C|1336
7KGB|1|a|U|1337
7KGB|1|a|A|1338
7KGB|1|a|G|1339
7KGB|1|a|U|1340
7KGB|1|a|A|1341
7KGB|1|a|A|1342
*
7KGB|1|a|U|1365
7KGB|1|a|G|1366
7KGB|1|a|A|1367
7KGB|1|a|A|1368
7KGB|1|a|U|1369
7KGB|1|a|A|1370
7KGB|1|a|C|1371
7KGB|1|a|G|1372
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
Coloring options: