J3_7KGB_025
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_025 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1207
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7KGB|1|a|C|1054
7KGB|1|a|G|1055
7KGB|1|a|U|1056
7KGB|1|a|C|1057
7KGB|1|a|A|1058
7KGB|1|a|G|1059
*
7KGB|1|a|C|1098
7KGB|1|a|G|1099
7KGB|1|a|C|1100
7KGB|1|a|A|1101
7KGB|1|a|A|1102
7KGB|1|a|C|1103
7KGB|1|a|C|1104
*
7KGB|1|a|G|1179
7KGB|1|a|A|1180
7KGB|1|a|U|1181
7KGB|1|a|G|1182
7KGB|1|a|A|1183
7KGB|1|a|C|1184
7KGB|1|a|G|1185
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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