J3_7KGB_026

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

7KGB|1|a|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7KGB_026 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.0917

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7KGB|1|a|U|1064
7KGB|1|a|G|1065
*
7KGB|1|a|U|1074
7KGB|1|a|G|1075
7KGB|1|a|U|1076
7KGB|1|a|U|1077
7KGB|1|a|G|1078
*
7KGB|1|a|C|1089
7KGB|1|a|G|1090
7KGB|1|a|C|1091
7KGB|1|a|A|1092
7KGB|1|a|A|1093

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5