J3_7KGB_028
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7KGB|1|a|U|1232, 7KGB|1|a|U|1294
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_028 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1309
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
7KGB|1|a|C|1229
7KGB|1|a|A|1230
7KGB|1|a|A|1231
7KGB|1|a|U|1232
7KGB|1|a|G|1233
*
7KGB|1|a|C|1288
7KGB|1|a|U|1289
7KGB|1|a|C|1290
7KGB|1|a|A|1291
7KGB|1|a|G|1292
7KGB|1|a|U|1293
7KGB|1|a|U|1294
7KGB|1|a|C|1295
*
7KGB|1|a|G|1326
7KGB|1|a|U|1327
7KGB|1|a|C|1328
7KGB|1|a|G|1329
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: