J3_7KGB_030
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 7KGB|1|A|U|34, 7KGB|1|A|U|537, 7KGB|1|A|U|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_030 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2429
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7KGB|1|A|C|32
7KGB|1|A|U|33
7KGB|1|A|U|34
7KGB|1|A|G|35
*
7KGB|1|A|C|534
7KGB|1|A|G|535
7KGB|1|A|A|536
7KGB|1|A|U|537
7KGB|1|A|A|538
7KGB|1|A|G|539
7KGB|1|A|C|540
7KGB|1|A|G|541
7KGB|1|A|G|542
7KGB|1|A|A|543
7KGB|1|A|U|544
7KGB|1|A|U|545
7KGB|1|A|A|546
7KGB|1|A|G|547
7KGB|1|A|U|548
7KGB|1|A|A|549
7KGB|1|A|C|550
*
7KGB|1|A|G|557
7KGB|1|A|G|558
7KGB|1|A|A|559
7KGB|1|A|A|560
7KGB|1|A|U|561
7KGB|1|A|G|562
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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