J3_7KGB_039
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7KGB|1|a|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_039 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1292
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7KGB|1|a|U|1107
7KGB|1|a|G|1108
7KGB|1|a|U|1109
*
7KGB|1|a|A|1147
7KGB|1|a|G|1148
7KGB|1|a|A|1149
7KGB|1|a|C|1150
7KGB|1|a|U|1151
7KGB|1|a|G|1152
7KGB|1|a|C|1153
*
7KGB|1|a|G|1167
7KGB|1|a|A|1168
7KGB|1|a|G|1169
7KGB|1|a|G|1170
7KGB|1|a|A|1171
7KGB|1|a|A|1172
7KGB|1|a|G|1173
7KGB|1|a|G|1174
7KGB|1|a|U|1175
7KGB|1|a|G|1176
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
Coloring options: