J3_7KVT_001

3D structure

PDB id

7KVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.73 Å

Loop

Sequence

CAAGGUGAG*UUAGGAUAGG*CGG

Length

22 nucleotides

Bulged bases

7KVT|1|B|A|11, 7KVT|1|B|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00458.1

Basepair signature

cWW-F-F-cSS-F-tWH-cSS-F-tHW-F-F-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7KVT|1|B|C|10
7KVT|1|B|A|11
7KVT|1|B|A|12
7KVT|1|B|G|13
7KVT|1|B|G|14
7KVT|1|B|U|15
7KVT|1|B|G|16
7KVT|1|B|A|17
7KVT|1|B|G|18
*
7KVT|1|B|U|38
7KVT|1|B|U|39
7KVT|1|B|A|40
7KVT|1|B|G|41
7KVT|1|B|G|42
7KVT|1|B|A|43
7KVT|1|B|U|44
7KVT|1|B|A|45
7KVT|1|B|G|46
7KVT|1|B|G|47
*
7KVT|1|B|C|72
7KVT|1|B|G|73
7KVT|1|B|G|74

Current chains

Chain B

Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions

Nearby chains