J3_7LH5_031
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LH5_031 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1195
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7LH5|1|CA|U|943
7LH5|1|CA|G|944
7LH5|1|CA|G|945
7LH5|1|CA|A|946
*
7LH5|1|CA|U|1235
7LH5|1|CA|A|1236
7LH5|1|CA|C|1237
*
7LH5|1|CA|G|1337
7LH5|1|CA|G|1338
7LH5|1|CA|A|1339
7LH5|1|CA|A|1340
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CI
- 30S ribosomal protein S9
- Chain CM
- 30S ribosomal protein S13
- Chain CU
- 30S ribosomal protein Thx
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
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