J3_7LH5_036
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 7LH5|1|CA|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LH5_036 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.2103
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7LH5|1|CA|C|1116
7LH5|1|CA|G|1117
7LH5|1|CA|C|1118
*
7LH5|1|CA|G|1155
7LH5|1|CA|G|1156
7LH5|1|CA|A|1157
7LH5|1|CA|C|1158
7LH5|1|CA|U|1159
7LH5|1|CA|G|1160
7LH5|1|CA|C|1161
*
7LH5|1|CA|G|1175
7LH5|1|CA|A|1176
7LH5|1|CA|G|1177
7LH5|1|CA|G|1178
7LH5|1|CA|A|1179
7LH5|1|CA|A|1180
7LH5|1|CA|G|1181
7LH5|1|CA|G|1182
7LH5|1|CA|A|1183
7LH5|1|CA|G|1184
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain AJ
- 30S ribosomal protein S10
- Chain CB
- 30S ribosomal protein S2
- Chain CG
- 30S ribosomal protein S7
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14 type Z
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