J3_7LH5_037

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7LH5|1|CA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LH5_037 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1108

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7LH5|1|CA|C|1237
7LH5|1|CA|A|1238
7LH5|1|CA|A|1239
7LH5|1|CA|U|1240
7LH5|1|CA|G|1241
*
7LH5|1|CA|C|1296
7LH5|1|CA|C|1297
7LH5|1|CA|C|1298
7LH5|1|CA|A|1299
7LH5|1|CA|G|1300
7LH5|1|CA|U|1301
7LH5|1|CA|U|1302
7LH5|1|CA|C|1303
*
7LH5|1|CA|G|1334
7LH5|1|CA|C|1335
7LH5|1|CA|C|1336
7LH5|1|CA|G|1337

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx