J3_7LH5_049

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7LH5|1|DA|A|2518, 7LH5|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LH5_049 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0536

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7LH5|1|DA|C|2517
7LH5|1|DA|A|2518
7LH5|1|DA|U|2519
7LH5|1|DA|C|2520
*
7LH5|1|DA|G|2545
7LH5|1|DA|U|2546
7LH5|1|DA|U|2547
*
7LH5|1|DA|A|2561
7LH5|1|DA|U|2562
7LH5|1|DA|U|2563
7LH5|1|DA|A|2564
7LH5|1|DA|A|2565
7LH5|1|DA|A|2566
7LH5|1|DA|G|2567

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DO

50S ribosomal protein L14