J3_7LH5_057
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7LH5|1|BA|C|34, 7LH5|1|BA|U|448, 7LH5|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LH5_057 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1341
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7LH5|1|BA|C|32
7LH5|1|BA|U|33
7LH5|1|BA|C|34
7LH5|1|BA|G|35
*
7LH5|1|BA|C|445
7LH5|1|BA|G|446
7LH5|1|BA|A|447
7LH5|1|BA|U|448
7LH5|1|BA|A|449
7LH5|1|BA|G|450
7LH5|1|BA|C|451
7LH5|1|BA|G|452
7LH5|1|BA|C|453
7LH5|1|BA|A|454
7LH5|1|BA|C|455
7LH5|1|BA|C|456
7LH5|1|BA|A|457
7LH5|1|BA|G|458
7LH5|1|BA|U|459
7LH5|1|BA|A|460
7LH5|1|BA|C|461
*
7LH5|1|BA|G|468
7LH5|1|BA|G|469
7LH5|1|BA|A|470
7LH5|1|BA|A|471
7LH5|1|BA|A|472
7LH5|1|BA|G|473
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B7
- 50S ribosomal protein L34
- Chain BF
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L20
- Chain BX
- 50S ribosomal protein L23
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