J3_7LH5_058

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

7LH5|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LH5_058 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0799

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7LH5|1|BA|C|297
7LH5|1|BA|G|298
7LH5|1|BA|A|299
7LH5|1|BA|A|300
7LH5|1|BA|G|301
*
7LH5|1|BA|C|316
7LH5|1|BA|G|317
7LH5|1|BA|C|318
7LH5|1|BA|C|319
7LH5|1|BA|A|320
7LH5|1|BA|G|321
7LH5|1|BA|A|322
7LH5|1|BA|G|323
7LH5|1|BA|A|324
7LH5|1|BA|G|325
*
7LH5|1|BA|C|337
7LH5|1|BA|G|338
7LH5|1|BA|U|339
7LH5|1|BA|A|340
7LH5|1|BA|G|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24