J3_7LH5_059

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LH5_059 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0862

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7LH5|1|BA|G|1424
7LH5|1|BA|G|1425
7LH5|1|BA|G|1426
7LH5|1|BA|A|1427
7LH5|1|BA|C|1428
7LH5|1|BA|G|1429
*
7LH5|1|BA|C|1564
7LH5|1|BA|C|1565
*
7LH5|1|BA|G|1568
7LH5|1|BA|A|1569
7LH5|1|BA|A|1570
7LH5|1|BA|A|1571
7LH5|1|BA|A|1572
7LH5|1|BA|G|1573
7LH5|1|BA|C|1574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2