J3_7LS1_005
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAG*CG(PSU)AG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_005 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.2439
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7LS1|1|A2|C|1359
7LS1|1|A2|A|1360
7LS1|1|A2|G|1361
*
7LS1|1|A2|C|1393
7LS1|1|A2|G|1394
7LS1|1|A2|PSU|1395
7LS1|1|A2|A|1396
7LS1|1|A2|G|1397
*
7LS1|1|A2|U|1422
7LS1|1|A2|C|1423
7LS1|1|A2|C|1424
7LS1|1|A2|G|1425
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- 60S ribosomal protein L8
- Chain L2
- 60S ribosomal protein L19
- Chain a2
- 60S ribosomal protein L34
- Chain j2
- 60S ribosomal protein L37a
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